Skip to main content

Table 1 List of proteins involved in EV biogenesis present in Sparicotyle chrysophrii

From: An inside out journey: biogenesis, ultrastructure and proteomic characterisation of the ectoparasitic flatworm Sparicotyle chrysophrii extracellular vesicles

Machinery

Gene name

Species

E-value genome

E-value transcriptome1

ESCRT-0

HGS a

Schistosoma mansoni

6.38E−33

–

 

STAM a

Schistosoma japonicum

3.56E−19

–

 

STAMBP a

Clonorchis sinensis

2.92E−63

2.47E−57

ESCRT-I

TSG101 a

Schistosoma japonicum

2.70E−18

8.25E−22

 

VPS28 a

Schistosoma japonicum

5.35E−35

1.09E−13

 

MVB12 a

Fasciola gigantica

1.66E−40

–

ESCRT-II

VPS SNF8 a

Paragonimus westermani

2.22E−40

2.34E−66

 

VPS25 a

Schistosoma haematobium

2.07E−74

–

 

VPS36 a

Homo sapiens

7.08E−44

9.67E−48

ESCRT-III

CHMP1a a

Homo sapiens

4.53E−41

2.05E−58

 

CHMP1b a

Fasciolopsis buski

2.40E−47

–

 

CHMP2a a

Homo sapiens

1.62E−24

–

 

CHMP2b a

Homo sapiens

1.10E−35

3.84E−41

 

CHMP3 a

Clonorchis sinensis

2.04E−20

–

 

CHMP4 a

Homo sapiens

3.17E−21

1.10E−32

 

CHMP5 a

Homo sapiens

3.64E−46

–

 

CHMP6 a

Homo sapiens

4.69E−10

1.48E−17

 

IST1 a

Homo sapiens

2.97E−45

1.81E−57

ESCRT-associated proteins

VPS4 a

Homo sapiens

1.25E−45

0

 

VTA1 a

Paragonimus heterotremus

8.08E−25

–

 

ALIX a, b

Echinococcus granulosus

1.41E−03

–

 

LITAF a

Paragonimus heterotremus

3.37E−11

–

Non-canonical ESCRT-associated

SDC1 b

Schistosoma mansoni

1.70E−11

–

 

SDCBP b

Homo sapiens

1.80E−08

–

 

Ral-A b

Homo sapiens

6.66E−46

–

 

ARF6 b, d

Schistosoma japonicum

8.52E−71

–

 

PLD2 b, d

Echinococcus granulosus

8.28E−16

–

Lipid-modifying

SMPD2c, d

Homo sapiens

1.28E−04

8.86E−25

 

SMS2 c

Fasciola hepatica

2.81E−105

–

 

SPHK2 c

Schistosoma haematobium

1.57E−11

–

 

LTA4H c

Homo sapiens

5.61E−140

1.74E−140

 

DGK c

Homo sapiens

3.63E−18

3.50E−58

Lipid transport

ABCA c, d

Homo sapiens

8.22E−117

3.30E−152

 

PLSCR d

Schistosoma japonicum

5.56E−12

–

 

OSBP c

Schistosoma bovis

2.81E−49

–

 

NPC1 c

Homo sapiens

1.90E−15

2.07E−66

 

NPC2 c

Clonorchis sinensis

4.55E−10

3.3E−28

Signalling

ARF1 d

Homo sapiens

1.13E−83

–

 

ROCK1 d

Fasciolopsis buski

6.42E−65

–

 

ROCK2 d

Schistosoma japonicum

1.24E−50

–

 

DIAPH3 d

Homo sapiens

2.87E−62

1.87E−65

 

MYLK3 d

Paragonimus heterotremus

0

2.99E−35

 

MAPK3 d

Fasciola hepatica

2.06E−35

 

Cytoskeleton remodelling

CAPN1 d

Homo sapiens

1.22E−38

2.62E−70

 

GELS d

Echinococcus multilocularis

1.50E−10

3.74E−36

Membrane organisers

CD63

Clonorchis sinensis

2.09E−21

–

 

FLOT1

Homo sapiens

2.13E−35

1.75E−115

 

FLOT2

Homo sapiens

2.19E−28

1.54E−142

SNAREs

STX1A

Echinococcus granulosus

1.40E−42

–

 

STX5

Fasciola gigantica

1.49E−17

–

 

YKT6

Paragonimus westermani

9.34E−10

–

 

SYT1

Schistosoma japonicum

3.20E−28

–

 

VAMP3

Homo sapiens

4.34E−14

–

RNA sorting and transport

hnRNPA2B1

Homo sapiens

1.69E−52

6.73E−59

 

NSEP1

Homo sapiens

1.83E−30

3.36E−38

 

hnRNPQ

Opisthorchis viverrini

7.42E-90

–

 

Ago2

Homo sapiens

1.48E−53

0

 

MVP

Schistosoma bovis

1.06E−60

1.81E−116

Other vault complex proteins

PARP4

Schistosoma mansoni

4.92E−28

–

  1. Lowercase superscript letters indicate the different EV biogenesis pathways. aESCRT-dependent pathway; bnon-canonical ESCRT-associated pathway; cESCRT-independent pathway; dEctosome formation pathways. 1: E-values from the transcriptome were solely obtained using Homo sapiens protein sequences. Bold lettering corresponds to protein sequences with ≥ 20% query coverage