Code | Host | Multi-locus sequence genotype | |||||
---|---|---|---|---|---|---|---|
ITS | MS1 | MS3 | MS4 | MS7 | MLGs | ||
Order Carnivora | |||||||
Family Ursidae | |||||||
 CDZ13 | Asiatic black bear (Ursus thibetanus) | SC02a | Type VII | Type I | Type VI | Type XIII | MLG8 |
 BFX01 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VII | Type I | Type I | Type VII | MLG14 |
 BFX02 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VII | Type I | Type I | Type I | MLG15 |
 BFX03 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VII | Type I | Type I | Type II | MLG16 |
 BFX04 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VII | Type I | Type I | Type VI | MLG17 |
 BFX05 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VII | Type I | Type I | Type VII | MLG14 |
 BFX06 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VII | Type III | Type I | Type V | MLG18 |
 BFX07 | Asiatic black bear (Ursus thibetanus) | SC01a | Type VIII | Type II | Type VIII | Type XIII | MLG19 |
 BFX08 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VIII | Type I | Type I | Type XIII | MLG20 |
 BFX09 | Asiatic black bear (Ursus thibetanus) | SC01a | Type VIII | Type II | Type VIII | Type XIII | MLG19 |
 BFX10 | Asiatic black bear (Ursus thibetanus) | SC02a | Type VII | Type II | Type I | Type XII | MLG21 |
 BFX11 | Asiatic black bear (Ursus thibetanus) | SC02a | Type VII | Type II | Type I | Type IV | MLG22 |
 BFX12 | Asiatic black bear (Ursus thibetanus) | SC01a | Type VIII | Type II | Type IX | Type XIII | MLG23 |
 BFX13 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VII | Type I | Type VII | Type VII | MLG24 |
 BFX14 | Asiatic black bear (Ursus thibetanus) | SC01a | Type VIII | Type II | Type XI | Type XIII | MLG23 |
 BFX15 | Asiatic black bear (Ursus thibetanus) | CHB1 | Type VII | Type I | Type I | Type IX | MLG25 |
 CDZ21 | Giant panda (Ailuropoda melanoleuca) | Peru 6 | Type IV | ns | Type X | Type VIII |  |
 CDZ03 | Malayan sun bear (Helarctos malayanus)b | CHB1 | Type VIII | Type I | Type V | Type II | MLG3 |
 CDZ15 | Malayan sun bear (Helarctos malayanus)b | SC02a | Type VIII | Type II | Type V | Type XIII | MLG10 |
 BFX20 | Brown bear (Ursus arctos)b | CHB1 | Type VI | Type I | Type I | Type II | MLG27 |
 CDZ05 | Tibetian blue bear (Ursus arctos pruinosus)b | SC02a | Type VIII | Type II | Type II | Type XIII | MLG4 |
 CDZ14 | Tibetian blue bear (Ursus arctos pruinosus)b | CHB1 | Type VII | Type I | Type I | Type III | MLG9 |
Family Ailuridae | |||||||
 BFX21 | Red panda (Ailurus fulgens) | CHB1 | ns | ns | ns | Type XI |  |
 BFX22 | Red panda (Ailurus fulgens) | CHB1 | ns | ns | ns | Type XIII |  |
Family Felidae | |||||||
 CDZ04 | African lion (Panthera leo) | D | Type VIII | ns | ns | ns |  |
 CDZ16 | African lion (Panthera leo) | D | Type VIII | Type I | Type I | ns |  |
 CDZ01 | Asiatic golden cat (Catopuma temminckii)b | D | Type VIII | Type I | Type IV | Type XIII | MLG1 |
Family Procyonidae | |||||||
 BFX16 | Northern raccoon (Procyon lotor) | D | ns | ns | ns | ns |  |
 BFX17 | Northern raccoon (Procyon lotor) | SC02a | ns | ns | ns | Type XIII |  |
Order Artiodactyla | |||||||
Family Cervidae | Â | Â | Â | Â | Â | Â | |
 CDZ02 | Red deer (Cervus elaphus) | BEB6 | Type VIII | Type II | Type IV | Type XIV | MLG2 |
 CDZ07 | Hog Deer (Axis porcinus)b | BEB6 | ns | Type I | ns | ns |  |
 CDZ08 | Hog Deer (Axis porcinus)b | CHS9 | Type VIII | Type I | Type IV | Type XV | MLG5 |
 CDZ10 | Hog Deer (Axis porcinus)b | BEB6 | Type VIII | Type I | Type IV | ns |  |
 CDZ11 | Sika deer (Cervus nippon) | BEB6 | Type III | Type II | Type I | Type VII | MLG6 |
 CDZ12 | Sika deer (Cervus nippon) | SC03a | Type VIII | Type I | Type IV | Type VII | MLG7 |
Family Camelidae | Â | Â | Â | Â | Â | Â | |
 CDZ09 | Alpaca (Lama pacos) | BEB6 | ns | ns | ns | ns |  |
Family Bovidae | Â | Â | Â | Â | Â | Â | |
 CDZ06 | Blackbuck (Antilope cervicapra)b | CHS9 | Type I | ns | Type IV | Type XV |  |
Order Primates | Â | Â | Â | Â | Â | Â | |
Family Cercopithecidae | Â | Â | Â | Â | Â | Â | |
 CDZ17 | Golden snub-nosed monkey (Rhinopithecus roxellana) | D | Type VIII | Type I | Type IV | Type VI | MLG11 |
 CDZ18 | Golden snub-nosed monkey (Rhinopithecus roxellana) | D | Type VIII | ns | ns | Type XIII |  |
 CDZ19 | Olive baboon (Papio anubis) | D | Type VIII | Type I | Type III | Type XIII | MLG12 |
 CDZ20 | Olive baboon (Papio anubis) | D | Type II | Type I | Type III | Type XIII | MLG13 |
Family Hylobatidae | Â | Â | Â | Â | Â | Â | |
 BFX18 | Northern white-cheeked gibbon (Nomascus leucogenys) | D | Type V | Type III | Type IV | Type X | MLG26 |
Family Lemuridae | Â | Â | Â | Â | Â | Â | |
 BFX19 | Ring-tailed lemur (Lemur catta) | CHB1 | Type VII | Type I | Type I | Type II | MLG16 |