Spatio-temporal genetic variation of the biting midge vector species Culicoides imicola (Ceratopogonidae) Kieffer in France

Jacquet, Stéphanie; Huber, Karine; Guis, Hélène; Setier-Rio, Marie-Laure; Goffredo, Maria; Allène, Xavier; Rakotoarivony, Ignace; Chevillon, Christine; Bouyer, Jérémy; Baldet, Thierry; Balenghien, Thomas; Garros, Claire

doi:10.1186/s13071-016-1426-4

Table 2 Genetic diversity and bottleneck results based on microsatellite data for each sampled site

From: Spatio-temporal genetic variation of the biting midge vector species Culicoides imicola (Ceratopogonidae) Kieffer in France

Country	Locations	Code	A_R	H_O	H_E	F_IS	P-values	IAM	TPM	SMM
France-Corsica	Figari	Ca1_02	4.390 ± 1.311	0.534 ± 0.132	0.569 ± 0.100	0.061	0.0961	0.082	0.633	0.981
France-Corsica	Figari	Ca1_08	4.483 ± 1.583	0.573 ± 0.156	0.594 ± 0.121	0.037	0.1998	0.010	0.285	0.850
France-Corsica	Figari	Ca1_10	4.285 ± 1.188	0.582 ± 0.154	0.590 ± 0.141	0.014	0.3648	0.005	0.024	0.935
France-Corsica	Figari	Ca1_12	4.263 ± 1.310	0.574 ± 0.144	0.592 ± 0.125	0.031	0.2372	0.019	0.150	0.590
France-Corsica	Porto-Vecchio	Ca2_02	4.541 ± 1.481	0.552 ± 0.112	0.572 ± 0.104	0.034	0.2074	0.082	0.633	0.976
France-Corsica	Porto-Vecchio	Ca2_08	4.431 ± 1.512	0.555 ± 0.110	0.599 ± 0.095	0.074	0.0440	0.010	0.180	0.850
France-Corsica	Bastelicaccia	Ca3_10	4.562 ± 1.688	0.616 ± 0.218	0.603 ± 0.138	−0.022	0.6934	0.014	0.367	0.820
France-Corsica	Bastelicaccia	Ca3_12	4.568 ± 1.365	0.549 ± 0.182	0.594 ± 0.159	0.077	0.0257	0.019	0.082	0.976
France-Corsica	San Giuliano	Cb1_02	4.240 ± 0.999	0.566 ± 0.154	0.574 ± 0.129	0.014	0.4029	0.010	0.367	0.850
France-Corsica	San Giuliano	Cb1_08	4.476 ± 1.194	0.661 ± 0.117	0.616 ± 0.087	−0.075	0.9621	0.010	0.285	0.787
France-Corsica	San Giuliano	Cb1_10	4.293 ± 1.369	0.550 ± 0.177	0.578 ± 0.116	0.050	0.1200	0.010	0.326	0.850
France-Corsica	Calvi	Cb2_02	4.368 ± 1.327	0.601 ± 0.150	0.611 ± 0.110	0.018	0.3430	0.007	0.180	0.674
France-Corsica	Calvi	Cb2_08	4.264 ± 0.979	0.523 ± 0.134	0.607 ± 0.115	0.140	0.0040	0.002	0.150	0.820
France-Corsica	Moltifao	Cb3_08	4.219 ± 1.358	0.546 ± 0.120	0.603 ± 0.110	0.096	0.0136	0.001	0.064	0.752
France-Corsica	Moltifao	Cb3_10	4.121 ± 0.867	0.611 ± 0.162	0.605 ± 0.131	−0.010	0.5996	0.005	0.064	0.590
France-Corsica	Moltifao	Cb3_12	4.307 ± 1.330	0.568 ± 0.197	0.576 ± 0.154	0.014	0.3401	0.064	0.410	0.850
France-Var department	Roquebrune-sur-Argens	V1_06	3.680 ± 0.794	0.560 ± 0.100	0.561 ± 0.082	0.103	0.0084	0.005	0.020	0.590
France-Var department	Roquebrune-sur-Argens	V1_08	3.501 ± 0.926	0.609 ± 0.112	0.584 ± 0.094	−0.044	0.4916	0.002	0.010	0.326
France-Var department	Roquebrune-sur-Argens	V1_10	3.690 ± 1.366	0.603 ± 0.150	0.587 ± 0.100	−0.029	0.8393	0.001	0.005	0.213
France-Var department	Roquebrune-sur-Argens	V1_12	3.566 ± 1.176	0.573 ± 0.125	0.592 ± 0.091	0.033	0.7551	0.001	0.001	0.082
France-Var department	Roquebrune-sur-Argens	V2_08	3.525 ± 0.361	0.515 ± 0.131	0.556 ± 0.127	0.075	0.2253	0.003	0.064	0.545
France-Var department	Roquebrune-sur-Argens	V2_10	3.744 ± 1.091	0.596 ± 0.146	0.581 ± 0.106	−0.027	0.0492	0.003	0.014	0.367
France-Var department	Roquebrune-sur-Argens	V2_12	4.031 ± 0.957	0.591 ± 0.103	0.570 ± 0.093	−0.038	0.8049	0.005	0.285	0.875
France-Var department	Bormes-Les-Mimosas	V3_08	3.820 ± 1.045	0.558 ± 0.147	0.572 ± 0.122	0.024	0.3183	0.014	0.150	0.633
France-Var department	Bormes-Les-Mimosas	V3_12	4.067 ± 1.045	0.519 ± 0.160	0.558 ± 0.117	0.072	0.0619	0.005	0.410	0.981
Italy-Sardinia	San Giovanni Suergiu	Sd_12	4.513 ± 1.926	0.560 ± 0.156	0.590 ± 0.143	0.052	0.0868	0.018	0.248	0.787

The allelic richness (A_R), observed (H_O) and expected (H_E) heterozygosity and F_IS are presented for each population. A_R is based on the minimum sample size of 27 diploid individuals. F_IS P-value adjusted at the nominal level (5 %) is 0.0002 after Bonferroni correction. Results of bottleneck tests (P-values) are presented for the Infinite Allele Model (IAM), Two-phase Model (TPM) and Stepwise Mutation Model (SMM)
The number at the end of each sample code corresponds to the collection year
Significant results of bottleneck tests are indicated in bold

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