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Table 3 Summary of 12 species delimitation analyses

From: Cox1 barcoding versus multilocus species delimitation: validation of two mite species with contrasting effective population sizes

Analysis

Loci

Number of species

81–taxon alignment

Caparinia tripilis+ictonyctis (K2P cox1 = 7.77%)

Dermatophagoides farinae (K2P cox1 = 4.19%)

1

PTP Maximum Likelihood

cox1

49

2

2

2

bPTP Highest Bayesian supported solution

cox1

54

2

6

3

GMYC (3 analyses with different trees)

cox1

49

2

2

4

ABGD (X = 1.1; P = 1.29%)

cox1

49

2

2

5

ABGD (X = 1.0–0.7, 0.5; P = 3.59%)

cox1

47

2

2

6

ABGD (X = 0.6, 0.4; P = 5.99%)

cox1

42

2

1+

7

ABGD (X = 0.2; P = 10%)

cox1

26

1+

1+

8

BPP [θ~G(1,10) τ0~G(1,10)]

5/2 loci

–

1

1

9

BPP [θ~G(2,1000) τ0~G(2,1000)]

5/2 loci

–

1–2

2

10

BPP [θ~G(1,10) τ0~G(2,1000)]

5/2 loci

–

2

2

11

STACEY

5/2 loci

–

2

1

12

PHRAPL

5/2 loci

–

na

2–3

  1. Key: 5/2 loci, for Caparinia/Dermatophagoides datasets, respectively; 5 loci, 18S+28S, EF1-α, SRP54, HSP70, cox1 (18S and 28S were merged because they are linked); 2 loci, cox1 and CPW2; 1+, was merged with a closest taxon
  2. Abbreviation: na, not available