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Table 3 Summary of annotation statistics for the final set of contigs. For each class of contig length the following data are given: number of contigs, number of contigs with a significant hit on Swissprot or Uniref90, number of peptides predicted by TransDecoder and number of contigs for which gene ontology terms could be extracted

From: Whole body transcriptomes and new insights into the biology of the tick Ixodes ricinus

Class

No. of contigs

No. of annotated (%)a

No of peptides (%)b

TGOc

301-500

100,081

19,017 (19.00)

16,289 (16.28)

5247 (5.24)

501-1000

49,324

16,604 (33.66)

16,295 (33.04)

6753 (13.69)

1001-1500

13,214

7658 (57.95)

8406 (63.61)

4442 (33.62)

1501-2000

6446

4641 (72.00)

5368 (83.28)

3185 (49.41)

2001-2500

3712

3033 (81.71)

3555 (95.77)

2271 (61.18)

2501-3000

2289

1930 (84.32)

2387 (104.28)

1500 (65.53)

3001-4000

2394

2182 (91.14)

2737 (114.33)

1779 (74.31)

4001,5000

1025

956 (93.27)

1179 (115.02)

814 (79.41)

5001-7500

716

676 (94.41)

882 (123.18)

602 (84.08)

7501-10000

96

93 (96.88)

132 (137.50)

91 (94.79)

10001-100000

19

19 (100.00)

27 (142.11)

18 (94.74)

Total

179,316

56,809 (31.68)

57,257 (31.93)

26,702 (14.89)

  1. aNumber of contigs with a significant hit on Swissprot or Uniref90
  2. bNumber of peptides predicted by TransDecoder
  3. cNumber of contigs for which gene ontology terms could be extracted