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Table 2 Statistics of sequence reads mapped to chromosomes

From: Differential gene expression in Anopheles stephensi following infection with drug-resistant Plasmodium yoelii

Sample name

R_As24h

S_As24h

R_As13d

S_As13d

R_As19d

S_As19d

Total reads

48,696,660

45,974,494

50,759,128

46,720,102

49,154,934

43,544,700

Total mapped (%)

33,863,898 (69.54)

31,833,061 (69.24)

32,893,865 (64.8)

31,436,501 (67.29)

33,605,516 (68.37)

30,132,506 (69.2)

Multiple mapped (%)

360,551 (0.74)

335,293 (0.73)

390,620 (0.77)

375,385 (0.8)

387,500 (0.79)

354,761 (0.81)

Uniquely mapped (%)

33,503,347 (68.8)

31,497,768 (68.51)

32,503,245 (64.03)

31,061,116 (66.48)

33,218,016 (67.58)

29,777,745 (68.38)

Reads map to ‘+’ (%)

16,759,346 (34.42)

15,759,435 (34.28)

16,246,792 (32.01)

15,544,924 (33.27)

16,616,630 (33.8)

14,899,272 (34.22)

Reads map to ‘−’ (%)

16,744,001 (34.38)

15,738,333 (34.23)

16,256,453 (32.03)

15,516,192 (33.21)

16,601,386 (33.77)

14,878,473 (34.17)

Non-splice reads (%)

25,443,056 (52.25)

23,876,914 (51.94)

24,708,873 (48.68)

22,802,795 (48.81)

24,659,025 (50.17)

22,113,465 (50.78)

Splice reads (%)

8,060,291 (16.55)

7,620,854 (16.58)

7,794,372 (15.36)

8,258,321 (17.68)

8,558,991 (17.41)

7,664,280 (17.6)

  1. Note: Multiple mapped, number of reads mapped to multiple sites; uniquely mapped, number of reads mapped to one site only; Reads mapped to ‘+’ or ‘−’, mapped to ‘+’ or ‘−’ strands of DNA; Splice reads, number of reads mapped to splice sites