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Table 1 Nucleotide diversity and summary statistics of Pvama1 in 73 P. vivax isolates from the China-Myanmar border area. The total sequenced region includes codons 50 to 479: Domain I codons 94 to 247 (nt, 280–741), Domain II codons 265 to 363 (nt, 793–1,089), and Domain III codons 388 to 451 (nt, 1,162–1,353)

From: Analysis of Pvama1 genes from China-Myanmar border reveals little regional genetic differentiation of Plasmodium vivax populations

 

k

H

Hd ± SD

S

η

π ± SD

θ ± SD

D

D*

F*

MK

Total

10.895

41

0.958 ± 0.014

43

46

0.008 ± 0.000

0.007 ± 0.002

0.495

0.772

0.796

0.0001***

D I

7.433

27

0.919 ± 0.022

26

28

0.016 ± 0.000

0.012 ± 0.004

0.912

0.269

0.608

0.004**

D II

1.385

9

0.783 ± 0.031

5

5

0.005 ± 0.000

0.003 ± 0.002

0.780

1.064

1.142

0.064

D III

0.419

3

0.330 ± 0.004

2

2

0.002 ± 0.000

0.002 ± 0.002

0.031

0.712

0.589

0.478

  1. Abbreviations: SD standard deviation, k the average number of nucleotide differences, H number of haplotypes, Hd haplotype diversity, S number of polymorphic (segregating) sites, η the total number of mutations, π pairwise nucleotide diversity, θ the expected nucleotide diversity under neutrality derived from S. D Tajima’s D test, D* Fu and Li’s D* value, F* Fu and Li’s F* value, MK McDonald-Kreitman test
  2. **P < 0.01; ***P < 0.0001