Haplotype | Sample name | Host | Scientific name | Location | GenBank reference | Reference |
---|---|---|---|---|---|---|
1 | canis10 | Dog | Canis lupus familiaris | Australia | AY493391 | [35] |
2 | canis202 | Dog | Canis lupus familiaris | Australia | AY493392 | [35] |
3 | canis22 | Dog | Canis lupus familiaris | USA | AY493393 | [35] |
3 | Sc38 | Raccoon dog | Nyctereutes procyonoides | Japan | AB821008 | [12] |
3 | Sc24 | Raccoon dog | Nyctereutes procyonoides | Japan | AB821006 | [12] |
3 | Sc20 | Raccoon dog | Nyctereutes procyonoides | Japan | AB821005 | [12] |
3 | S16 | Human | Homo sapiens | France | -a | [32] |
3 | dog3_china | Dog | Canis lupus familiaris | China | KT961022 | This study |
3 | dog_italy | Dog | Canis lupus familiaris | Italy | KT961025 | This study |
3 | dog1_france | Dog | Canis lupus familiaris | France | KT961029 | This study |
3 | fox1_france | Fox | Vulpes vulpes | France | KT961030 | This study |
3 | fox2_france | Fox | Vulpes vulpes | France | KT961031 | This study |
3 | fox3_france | Fox | Vulpes vulpes | France | KT961032 | This study |
4 | canis19 | Dog | Canis lupus familiaris | Australia | AY493394 | [35] |
5 | canis9 | Dog | Canis lupus familiaris | USA | AY493395 | [35] |
6 | Sc135 | Raccoon dog | Nyctereutes procyonoides | Japan | AB821012 | [12] |
6 | Sc108 | Dog | Canislupus familiaris | Japan | AB821011 | [12] |
6 | Sc34 | Raccoon dog | Nyctereutes procyonoides | Japan | AB821007 | [12] |
6 | Sc18 | Raccoon dog | Nyctereutes procyonoides | Japan | AB821004 | [12] |
6 | dog2ch | Dog | Canis lupus familiaris | China | KJ499544 | [33] |
7 | dog1ch | Dog | Canis lupus familiaris | China | KJ748527 | [33] |
8 | dog3ch | Dog | Canis lupus familiaris | China | KJ499545 | [33] |
9 | dog4ch | Dog | Canis lupus familiaris | China | KJ748529 | [33] |
10 | dog5ch | Dog | Canis lupus familiaris | China | KJ748528 | [33] |
11 | Canis aureus | Jackal | Canis aureus | Israel | KP987792 | [36] |
11 | Vulpes | Fox | Vulpes vulpes | Israel | KP987794 | [36] |
11 | S42 | Human | Homo sapiens | France | -b | [32] |
12 | hominis208 | Human | Homo sapiens | Australia | AY493382 | [35] |
12 | S60 | Human | Homo sapiens | France | -c | [32] |
12 | 1 M | Human | Homo sapiens | France | -c | [32] |
12 | 2 M | Human | Homo sapiens | France | -c | [32] |
12 | 9 M | Human | Homo sapiens | France | -c | [32] |
12 | 4 M | Human | Homo sapiens | France | -c | [32] |
12 | 5 M | Human | Homo sapiens | France | -c | [32] |
12 | 7 M | Human | Homo sapiens | France | -c | [32] |
12 | S14 | Human | Homo sapiens | France | -c | [32] |
12 | S45 | Human | Homo sapiens | France | -c | [32] |
12 | S46 | Human | Homo sapiens | France | -c | [32] |
12 | S47 | Human | Homo sapiens | France | -c | [32] |
12 | S48 | Human | Homo sapiens | France | -c | [32] |
12 | S59 | Human | Homo sapiens | France | -c | [32] |
12 | S74 | Human | Homo sapiens | France | -c | [32] |
13 | hominis13 | Human | Homo sapiens | Australia | AY493383 | [35] |
14 | hominis14 | Human | Homo sapiens | Australia | AY493384 | [35] |
15 | S32 | Human | Homo sapiens | France | KR058184 | [32] |
15 | S7 | Human | Homo sapiens | France | -d | [32] |
15 | S9 | Human | Homo sapiens | France | -d | [32] |
15 | 10 M | Human | Homo sapiens | France | -d | [32] |
15 | S12 | Human | Homo sapiens | France | -d | [32] |
15 | S15 | Human | Homo sapiens | France | -d | [32] |
15 | S20 | Human | Homo sapiens | France | -d | [32] |
15 | S21 | Human | Homo sapiens | France | -d | [32] |
15 | S27 | Human | Homo sapiens | France | -d | [32] |
15 | S11 | Human | Homo sapiens | France | -d | [32] |
15 | S25 | Human | Homo sapiens | France | -d | [32] |
15 | S29 | Human | Homo sapiens | France | -d | [32] |
15 | S38 | Human | Homo sapiens | France | -d | [32] |
15 | S40 | Human | Homo sapiens | France | -d | [32] |
15 | S44 | Human | Homo sapiens | France | -d | [32] |
15 | S50 | Human | Homo sapiens | France | -d | [32] |
15 | S51 | Human | Homo sapiens | France | -d | [32] |
15 | S56 | Human | Homo sapiens | France | -d | [32] |
15 | S30 | Human | Homo sapiens | France | -d | [32] |
15 | S34 | Human | Homo sapiens | France | -d | [32] |
15 | S39 | Human | Homo sapiens | France | -d | [32] |
15 | S57 | Human | Homo sapiens | France | -d | [32] |
15 | S8 | Human | Homo sapiens | France | -d | [32] |
15 | 13 M | Human | Homo sapiens | France | -d | [32] |
15 | 15 M | Human | Homo sapiens | France | -d | [32] |
15 | 20 M | Human | Homo sapiens | France | -d | [32] |
15 | S69 | Human | Homo sapiens | France | -d | [32] |
15 | S71 | Human | Homo sapiens | France | -d | [32] |
16 | S58 | Human | Homo sapiens | France | KR058186 | [32] |
17 | 8 M | Human | Homo sapiens | France | -e | [32] |
18 | 18 M | Human | Homo sapiens | France | KR058187 | [32] |
19 | dog1_china | Dog | Canis lupus familiaris | China | KT961021 | This study |
19 | dog5_china | Dog | Canis lupus familiaris | China | KT961023 | This study |
20 | dog4_china | Dog | Canis lupus familiaris | China | KT961028 | This study |
20 | dog2_france | Dog | Canis lupus familiaris | IDF/France | KT961024 | This study |
20 | dog_SthAfr | Dog | Canis lupus familiaris | South Africa | KT961026 | This study |
21 | dog_thd | Dog | Canis lupus familiaris | Thailand | KT961027 | This study |