Development of a framework for genotyping bovine-derived Cryptosporidium parvum, using a multilocus fragment typing tool

Table 3 Multilocus fragment typing of Cryptosporidium parvum samples sourced from 118 UK calves

	MM5	MM18	MM19	TP14	MS1	MS9	gp60	MLG
	235	288	298	296	361	455	IIaA15G2R1	1
	262	288	298	304	361	455	IIaA15G2R1	2
	235	288	298	296	361	455	IIaA17G1R1	3
	262	288	304	296	361	455	IIaA15G2R1	4
	262	294	292	304	361	455	IIaA15G2R1	5
	262	288	292	296	361	455	IIaA15G2R1	6
	262	294	292	304	361	455	IIaA17G1R1	7
	235	288	292	296	361	455	IIaA18G3R1	8
	262	294	298	296	361	455	IIaA17G1R1	9
	262	294	298	304	361	455	IIaA15G2R1	10
	262	288	292	304	361	455	IIaA15G2R1	11
	262	288	298	296	361	455	IIaA15G2R1	12
	235	288	270	296	361	455	IIaA15G2R1	13
	262	288	316	296	361	455	IIaA15G2R1	14
	262	288	292	296	361	455	IIaA17G1R1	15
	262	288	253	296	361	455	IIaA15G2R1	16
	262	288	298	296	361	455	IIaA16G3R1	17
	262	288	298	296	361	455	IIaA19G1R1	18
	262	318	298	296	361	455	IIaA15G2R1	19
	262	288	298	296	361	455	IIaA17G1R1	20
	262	294	281	296	361	455	IIaA15G2R1	21
	262	294	298	296	361	455	IIaA15G2R1	22
	262	294	292	296	361	455	IIaA18G1R1	23
Typeability	0.91	0.92	0.91	0.90	0.93	0.96	0.97	0.84
(95 % CI)	(0.85–0.95)	(0.86–0.96)	(0.86–0.95)	(0.84–0.94)	(0.87–0.96)	(0.90–0.99)	(0.93–0.99)	(0.77–0.90)
SID (95 % CI)	0.35 (0.26–0.43)	0.41 (0.32–0.50)	0.60 (0.54–0.67)	0.35 (0.26–0.43)	0.00 (0.00–0.06)	0.00 (0.00–0.06)	0.44 (0.33–0.54)	0.92 (0.90–0.94)

gp60 subgenotypes are included in multilocus genotype (MLG) assignment. Typeability and Simpson’s Index of Diversity (SID) are reported for allele and MLG assignment, with 95 % confidence intervals (95 % CI)

ISSN: 1756-3305