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Table 3 The cox1 (CO1-Ha) and nad1 (ND1-Ha) haplotypes identified for Fascioloides magna from North American localities

From: Genetic interrelationships of North American populations of giant liver fluke Fascioloides magna

Country/province, state

cox1 haplotype code

GenBank Acc. no.

No. of specimens

nad1 haplotype code

GenBank Acc. no.

No. of specimens

CO1-Ha freq. - %

ND1-Ha freq. - %

Canada/Alberta (AB)

CO1-Ha1/AB

GU599861a

95 → 38.3 (Ha1)

ND1-Ha3/AB

GU599845a

90 → 39.6 (Ha3)

 

CO1-Ha6/AB

GU599871a

26 → 10.5 (Ha6)

ND1-Ha8/AB

GU599846a

11 → 4.8 (Ha8)

Canada/British

CO1-Ha1/BC

KP635011

 

ND1-Ha3/BC

KP635037

 

Columbia (BC)

CO1-Ha20/BC

KP635012

3 → 1.2 (Ha20)

ND1-Ha24/BC

KP635038

6 → 2.6 (Ha24)

 

CO1-Ha21/BC

KP635013

5 → 2.0 (Ha21)

ND1-Ha25/BC

KP635039

3 → 1.3 (Ha25)

    

ND1-Ha30/BC

KP635040

1 → 0.4 (Ha30)

Canada/Northern

CO1-Ha9/NL/QC

KP635014, KP635017

14 → 5.6 (Ha9)

ND1-Ha12/QC

KP635041

11 → 4.8 (Ha12)

Quebec (QC) and

CO1-Ha17NL/QC

KP635015, KP635018

10 → 4.0 (Ha17)

ND1-Ha19/QC/NL

KP635042, KP635047

25 → 11.0 (Ha19)

Labrador (NL)

CO1-Ha18/NL

KP635016

1 → 0.4 (Ha18)

ND1-Ha20/QC/NL

KP635043, KP635048

6 → 2.6 (Ha20)

 

CO1-Ha22/QC

KP635019

5 → 2.0 (Ha22)

ND1-Ha21/QC

KP635044

2 → 0.9 (Ha21)

 

CO1-Ha28/QC

KP635020

2 → 0.8 (Ha28)

ND1-Ha22/QC/NL

KP635045, KP635049

4 → 1.8 (Ha22)

    

ND1-Ha23/QC

KP635046

1 → 0.4 (Ha23)

USA/Oregon (OR)

CO1-Ha1/OR

GU599862a

 

ND1-Ha3/OR

GU599848a

 

USA/Minnesota (MN)

CO1-Ha8/MN

GU599873a

13 → 5.2 (Ha8)

ND1-Ha9/MN

GU599849a

7 → 3.1 (Ha9)

 

CO1-Ha9/MN

GU599874a

 

ND1-Ha10/MN

GU599850a

12 → 5.3 (Ha10)

 

CO1-Ha10/MN

GU599875a

4 → 1.6 (Ha10)

ND1-Ha11/MN

GU599851a

2 → 0.9 (Ha11)

 

CO1-Ha11/MN

GU599876a

3 → 1.2 (Ha11)

ND1-Ha12/MN

GU599852a

 
 

CO1-Ha19/MN

KP635021

1 → 0.4 (Ha19)

ND1-Ha32/MN

KP635050

1 → 0.4 (Ha32)

USA/Mississippi (MS)

CO1-Ha9/MS

KP635022

 

ND1-Ha12/MS

KP635051

 
 

CO1-Ha12/MS

GU599877a

2 → 0.8 (Ha12)

ND1-Ha15/MS

GU599855a

2 → 0.9 (Ha15)

 

CO1-Ha13/MS

GU599878a

1 → 0.4 (Ha13)

ND1-Ha16/MS

GU599856a

2 → 0.9 (Ha16)

 

CO1-Ha14/MS

GU599879a

1 → 0.4 (Ha14)

ND1-Ha17/MS

GU599857a

5 → 2.2 (Ha17)

 

CO1-Ha15/MS

GU599880a

3 → 1.2 (Ha15)

   

USA/Florida (FL)

CO1-Ha16/FL

GU599882a

22 → 8.9 (Ha16)

ND1-Ha13/FL

GU599853a

15 → 6.6 (Ha13)

    

ND1-Ha14/FL

GU599854a

2 → 0.9 (Ha14)

    

ND1-Ha27/FL

KP635052

3 → 1.3 (Ha27)

    

ND1-Ha28/FL

KP635053

2 → 0.9 (Ha28)

USA/Georgia (GA)

CO1-Ha7/GA

GU599872a

1 → 0.4 (Ha7)

ND1-Ha9/GA

GU599847a

 
 

CO1-Ha16/GA

KP635023

 

ND1-Ha13/GA

KP635054

 

USA/Louisiana (LA)

CO1-Ha15/LA

GU599881a

 

ND1-Ha10/LA

KP635055

 
 

CO1-Ha29/LA

KP635024

1 → 0.4 (Ha29)

ND1-Ha12/LA

KP635056

 
 

CO1-Ha30/LA

KP635025

1 → 0.4 (Ha30)

ND1-Ha16/LA

GU599858a

 
 

CO1-Ha31/LA

KP635026

1 → 0.4 (Ha31)

ND1-Ha17/LA

KP635057

 
 

CO1-Ha32/LA

KP635027

1 → 0.4 (Ha32)

ND1-Ha18/LA

GU599859a

2 → 0.9 (Ha18)

 

CO1-Ha33/LA

KP635028

2 → 0.8 (Ha33)

   
 

CO1-Ha34/LA

KP635029

1 → 0.4 (Ha34)

   

USA/South Carolina (SC)

CO1-Ha3/SC

KP635030

7 → 2.8 (Ha3)

ND1-Ha4/SC

KP635058

2 → 0.9 (Ha4)

 

CO1-Ha23/SC

KP635031

16 → 6.5 (Ha23)

ND1-Ha6/SC

KP635059

5 → 2.2 (Ha6)

 

CO1-Ha24/SC

KP635032

1 → 0.4 (Ha24)

ND1-Ha19/SC

KP635060

 
 

CO1-Ha25/SC

KP635033

1 → 0.4 (Ha25)

ND1-Ha26/SC

KP635061

1 → 0.4 (Ha26)

 

CO1-Ha26/SC

KP635034

1 → 0.4 (Ha26)

ND1-Ha29/SC

KP635062

3 → 1.3 (Ha29)

 

CO1-Ha27/SC

KP635035

2 → 0.8 (Ha27)

ND1-Ha31/SC

KP635063

1 → 0.4 (Ha31)

 

CO1-Ha35/SC

KP635036

1 → 0.4 (Ha35)

   
  1. Frequency (freq.) of haplotypes were calculated for all individuals having the respective Ha despite of their locality; numbering of haplotypes follows that of Králová-Hromadová et al. [13], therefore Ha numbers of exclusively European populations are missing; adata published in Králová-Hromadová et al. [13]