Table 4 Relative abundance of nematode miRNA in fluids in comparison to host miRNAs (reads per million)
From: Extracellular Onchocerca-derived small RNAs in host nodules and blood
miRNA | Sequence | O. ochengi | O. volvulus (Ghana) | O. volvulus (Cameroon) | L. sigmodontis |
|---|---|---|---|---|---|
Ooc-miR-71 | UGAAAGACAUGGGUAGUGAGAC[G]3 | 117.6 | 39.6 | 7.3 | 25.1 |
Ooc-lin-4 | UCCCUGAGACCUCUGCUGCGA | 1355.8 | 29.5 | 5.4 | ND (<0.8)2 |
Ooc-miR-100d 1 | AACCCGUAGUUUCGAACAUGUGU | 86.2 | 127.0 | ND (<0.3)2 | 31.4 |
Ooc-miR-87-3p | GUGAGCAAAGUUUCAGGUGUUC | 26.1 | 34.4 | ND (<0.3)2 | ND (<0.8)2 |
Ooc-miR-100a | UACCCGUAGCUCCGAAUAUGUGU | 979.6 | 41.3 | ND (<0.3)2 | 376.0 |
Ooc-bantam-a 1 | UGAGAUCAUUGUGAAAGCUAUU | 12863.4 | 28.7 | ND (<0.3)2 | 35.3 |
Ooc-miR-86 | UAAGUGAAUGCUUUGCCACAGUCU | 65.3 | ND (<0.8)2 | ND (<0.3)2 | 44.7 |
Ooc-miR-263/183 | AAUGGCACUAGAUGAAUUCACGG | 44.4 | ND (<0.8)2 | ND (<0.3)2 | 5.5 |
Ooc-miR-50-5p | UGAUAUGUCUGAUAUUCUUGGGUU | 31.3 | ND (<0.8)2 | ND (<0.3)2 | 7.9 |
Ooc-miR-34 | UGGCAGUGUGGUUAGCUGGUUGU | 70.5 | ND (<0.8)2 | ND (<0.3)2 | 6.3 |
Ooc-miR-5866 | UUACCAUGUUGAUCGAUCUCC[A]3 | 70.5 | ND (<0.8)2 | ND (<0.3)2 | 1.60 |
| Â | Total host miRNAs | 382791 | 2472450 | 5924748 | 1273839 |